docs: moves notebook figures to _assets for sphinx

There was an issue with static assets not being properly copied in
the sphinx documentation. The assets have now been moved to
`_static` to ensure that sphinx is able to copy them during build.
The Jupyter notebooks use the images from `_static`.

docs/learning/05 Adding Functionality.ipynb

@@ -25,7 +25,7 @@
     "# This loads some custom styles for matplotlib\n",
     "import json, matplotlib\n",
     "\n",
-    "with open(\"assets/matplotlibrc.json\") as f:\n",
+    "with open(\"../_static/matplotlibrc.json\") as f:\n",
     "    matplotlib.rcParams.update(json.load(f))\n",
     "\n",
     "np.random.seed(\n",

docs/learning/09 Adding Documentation.ipynb

@@ -19,7 +19,7 @@
     "The classic way to do this in the python community is to use a tool called [Sphinx](https://www.sphinx-doc.org/en/master/), you'll probably be quite familiar with pages generated by Sphinx if you've ever used any python packages. To give you teaser by the end of this chapter we will have an autogenerated website for the project that looks like [this](https://recode-mcmcff.readthedocs.io/en/latest/)\n",
     "\n",
     "<div style=\"margin:auto;max-width:800px;\">\n",
-    "<img src=\"assets/readthedocs_screenshot.png\" alt=\"A screenshot of the read the docs page linked above\"/>\n",
+    "<img src=\"../_static/readthedocs_screenshot.png\" alt=\"A screenshot of the read the docs page linked above\"/>\n",
     "</div>"
    ]
   },
@@ -46,13 +46,13 @@
    "source": [
     "This means that the part of our source code that looks like: \n",
     "<div style=\"margin:auto;max-width:800px;\">\n",
-    "<img src=\"assets/sourcecode_screenshot.png\" alt=\"A screenshot of lines 50-77 of MCFF/mcmc.py\"/>\n",
+    "<img src=\"../_static/sourcecode_screenshot.png\" alt=\"A screenshot of lines 50-77 of MCFF/mcmc.py\"/>\n",
     "</div>\n",
     "\n",
     "will get rendered to [this][readthedocs_api]:\n",
     "\n",
     "<div style=\"margin:auto;max-width:800px;\">\n",
-    "<img src=\"assets/readthedocs_api_screenshot.png\" alt=\"A screenshot of the previous link showing what mcmc.py gets rendered to\"/>\n",
+    "<img src=\"../_static/readthedocs_api_screenshot.png\" alt=\"A screenshot of the previous link showing what mcmc.py gets rendered to\"/>\n",
     "</div>\n",
     "\n",
     "[readthedocs_api]: https://recode-mcmcff.readthedocs.io/en/latest/api_docs.html"
@@ -215,9 +215,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python [conda env:recode]",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
-   "name": "conda-env-recode-py"
+   "name": "python3"
   },
   "language_info": {
    "codemirror_mode": {
@@ -229,7 +229,12 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.12"
+   "version": "3.8.10"
+  },
+  "vscode": {
+   "interpreter": {
+    "hash": "f5403acae4671aac0ae5a29dd5903d33d0105a9e9d4148f755d3321f5023d387"
+   }
   }
  },
  "nbformat": 4,

docs/learning/walkers_plot/plot_montecarlo_walkers.py

@@ -18,7 +18,7 @@ import pickle
 # This loads some custom styles for matplotlib
 import json, matplotlib
 
-with open("../assets/matplotlibrc.json") as f:
+with open("../../_static/matplotlibrc.json") as f:
     matplotlib.rcParams.update(json.load(f))
 
 from itertools import count